Faatal's question was whether or not this problem continues if you disable ALL OTHER addons, but leave Carbonite enabled. That is the only way to tell if another addon is interfering with Carbonite.
In other words: At the character selection screen, open your "AddOns" window, and click the "Disable All" button, then go down the list and enable ONLY Carbonite and it's modules. Click "OK" and enter your realm. Does the problem still persist with this set up?
If it does not, then another addon is most likely interfering with Carbonite.
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