Kodewulf is correct... nUI sets a "watched" faction when you get reputation updates. That's easy to fix... just press "U" to open the reputation frame and scroll down until you find the one that is checked and uncheck it.
The chat frame thing, as well, you've already found the fix for, so good deal there.
The last item, the keyring, I'm at a complete loss. nUI only moves the keyring button when it is loaded and to the best of my knowledge, there's no character specific, or account wide, option to enable/disable the keyring display, etc. I don't believe this was caused by nUI, though I could be wrong, and I have no clue how you would go about fixing it.
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