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Okay, if gempDB the table is populating, and changing settings in game actually does stuff, yet reloading the UI and exiting out of the game do not write to disk, then you probably have a file permission issue.
Assuming you use Windows, is your game installed in some variant of Program Files\World of Warcraft? If so, move the game to a neutral folder, like C:\ or C:\Blizzard\World of Warcraft. Windows is notorious for not letting the Program Files path have write privileges.
You can further test this by installed a totally different AddOn, changing its settings, then either reloading the UI or exiting out and checking the saved variables file. If nothing is written, then you know for sure.
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