Got it
1) Go into Skada's config.
2) Create a new profile named "Healer" or whatever you would like. Ignore the borked windows.
3) Just below the create new profile box, choose to "copy from" and select "Default" or whatever yours is set to. Default is what makes all your data go with every toon no matter what one you are on.
4) /nui rl (fixes borked infopanel view of Skada)
5) Make changes to your Healer profile
Rinse and repeat for every style of view you would like. Everytime you load a new profile, you will have to /nui rl or the view of the windows will stay borked
Changing profiles seems to mess with nUI's control of Skada's placement since I believe placement and association with the Infopanel is only done at load.