The only configurations I know how to save are in /bongos, where you can save your profile. The standard movement, chat, targeting keys, etc, have to be saved as a file in your WTF folder, but I have no clue where.
However, unless you're deleting your WTF folder, remazzifying shouldn't mess up your key config. There might be another problem at hand. Not at home, so can't check what file might store your character info.
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