If it's just setting the opacity to 0 instead of actually hiding the frames during pet battles, that sounds like an obvious bug/design flaw in the addon. By definition you cannot be in combat when you enter a pet battle, so it's totally possible to hide unit frames at that time, and even if you get knocked out of a pet battle due to PVP, addons are still able to hide/show unit frames (and other secure frames) in response to that event before the UI gets locked down for combat. You should definitely report this problem to the addon's author.
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Retired author of too many addons.
Message me if you're interested in taking over one of my addons.
Don’t message me about addon bugs or programming questions.
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