Ah, there were many WoW API changes from 3.0.2 to 3.1.0 that could have negatively affected that particular AddOn. In that case, the code itself would need to be fixed. I asked the author about it and this is what he had to say:
[14:08] <Adirelle> Torhal: I'm not using it, but AFAIK it still works
[14:08] <Torhal> Adirelle: Ah, there is someone on WoWI who is saying it's broken.
[14:09] <Adirelle> inlineaura and cooldownfader don't play nice together (they work, but hiding the countdown is quite fail)
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