Carbonite will show the instance map as described below. With Atlas installed it can show the Atlas map for non WotLK instances. The minimap can be made full size in the Carb map setting/using the keybinding or right click the Carb map, select Minimap, check Full Size.
From the download page:
New: Carbonite now supports the Blizzard maps added for WotLK instances. Right click an instance location on the map and "Toggle Instance Map" or enter the instance for it to be drawn on the Carbonite map. You will need to zoom in, since they are drawn at a small size. You can see your location and create favorites in the instance.
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