Carbonite inside raid-instances

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Hi, I never used Carbonite inside a raid before tonight. I was in Naxx and the Carbonite map kept showing an area outside the instance and player-positions were not updated. I had to enable the default mini-map partway through (it was in fact necessary on Maexxna in order to see player-"pings" when being wrapped).

Can Carbonite be configured somehow to function inside instances?

PS: Using version 3.1 released yesterday.